5CPS
Disproportionating enzyme 1 from Arabidopsis - maltotriose soak
- PDB DOI: https://doi.org/10.2210/pdb5CPS/pdb
- Classification: TRANSFERASE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2015-07-21 Released: 2015-11-04 
- Funding Organization(s): Biotechnology and Biological Sciences Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.179 
- R-Value Work: 0.153 
- R-Value Observed: 0.154 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic | 564 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: DPE1, At5g64860, MXK3.9 EC: 2.4.1.25 | ||
UniProt | |||||
Find proteins for Q9LV91 (Arabidopsis thaliana) Explore Q9LV91  Go to UniProtKB:  Q9LV91 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9LV91 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | C | 9 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G96412PU GlyCosmos:  G96412PU |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | D | 8 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G47550UM GlyCosmos:  G47550UM GlyGen:  G47550UM |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.179 
- R-Value Work: 0.153 
- R-Value Observed: 0.154 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.41 | α = 65.46 |
b = 73.13 | β = 69.48 |
c = 79.12 | γ = 67.09 |
Software Name | Purpose |
---|---|
SCALA | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
XDS | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-11-04  Deposition Author(s): O'Neill, E.C., Stevenson, C.E.M., Tantanarat, K., Latousakis, D., Donaldson, M.I., Rejzek, M., Limpaseni, T., Smith, A.M., Field, R.A., Lawson, D.M.
Funding Organization | Location | Grant Number |
---|---|---|
Biotechnology and Biological Sciences Research Council | United Kingdom | BB/J004561/1 |
Revision History (Full details and data files)
- Version 1.0: 2015-11-04
Type: Initial release - Version 1.1: 2015-12-23
Changes: Database references - Version 1.2: 2017-08-30
Changes: Author supporting evidence - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary