5XX9

Crystal structure of Bacterioferritin

PDB DOI: https://doi.org/10.2210/pdb5XX9/pdb

Classification: METAL TRANSPORT
Organism(s): Streptomyces coelicolor A3(2)
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-07-01 Released: 2018-07-11
Deposition Author(s): Jobichen, C., Rajesh, R., Angayarkanni, J., Sivaraman, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.208
R-Value Work: 0.161
R-Value Observed: 0.163

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Bacterioferritin nanocage structures uncover the bio-mineralization process in ferritins

Jobichen, C., Chong, T.Y., Rattinam, R., Basak, S., Srinivasan, M., Choong, Y.K., Pandey, K.P., Ngoc, T.B., Shi, J., Angayarkanni, J., Sivaraman, J.

(2023) PNAS Nexus

DOI: https://doi.org/10.1093/pnasnexus/pgad235

Macromolecule Content

Total Structure Weight: 116.13 kDa
Atom Count: 8,454
Modelled Residue Count: 960
Deposited Residue Count: 1,002
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bacterioferritin	A, B, C, D, E A, B, C, D, E, F	167	Streptomyces coelicolor A3(2)	Mutation(s): 0 Gene Names: bfr, SCO2113, SC6E10.07 EC: 1.16.3.1
UniProt
Find proteins for Q9S2N0 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q9S2N0 Go to UniProtKB: Q9S2N0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9S2N0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE2 Query on FE2 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth B] SDF format, chain K [auth C] SDF format, chain L [auth C] SDF format, chain M [auth D] SDF format, chain N [auth D] SDF format, chain O [auth E] SDF format, chain P [auth E] SDF format, chain Q [auth E] SDF format, chain R [auth F] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth C] MOL2 format, chain L [auth C] MOL2 format, chain M [auth D] MOL2 format, chain N [auth D] MOL2 format, chain O [auth E] MOL2 format, chain P [auth E] MOL2 format, chain Q [auth E] MOL2 format, chain R [auth F]	G [auth A] H [auth A] I [auth A] J [auth B] K [auth C] G [auth A], H [auth A], I [auth A], J [auth B], K [auth C], L [auth C], M [auth D], N [auth D], O [auth E], P [auth E], Q [auth E], R [auth F]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth E] Focus chain Q [auth E] Focus chain R [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth C] Focus chain L [auth C] Focus chain M [auth D] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth E] Focus chain Q [auth E] Focus chain R [auth F]