5WHZ

PGDM1400-10E8v4 CODV Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.55 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Trispecific broadly neutralizing HIV antibodies mediate potent SHIV protection in macaques.

Xu, L.Pegu, A.Rao, E.Doria-Rose, N.Beninga, J.McKee, K.Lord, D.M.Wei, R.R.Deng, G.Louder, M.Schmidt, S.D.Mankoff, Z.Wu, L.Asokan, M.Beil, C.Lange, C.Leuschner, W.D.Kruip, J.Sendak, R.Do Kwon, Y.Zhou, T.Chen, X.Bailer, R.T.Wang, K.Choe, M.Tartaglia, L.J.Barouch, D.H.O'Dell, S.Todd, J.P.Burton, D.R.Roederer, M.Connors, M.Koup, R.A.Kwong, P.D.Yang, Z.Y.Mascola, J.R.Nabel, G.J.

(2017) Science 358: 85-90

  • DOI: https://doi.org/10.1126/science.aan8630
  • Primary Citation of Related Structures:  
    5WHZ

  • PubMed Abstract: 

    The development of an effective AIDS vaccine has been challenging because of viral genetic diversity and the difficulty of generating broadly neutralizing antibodies (bnAbs). We engineered trispecific antibodies (Abs) that allow a single molecule to interact with three independent HIV-1 envelope determinants: the CD4 binding site, the membrane-proximal external region (MPER), and the V1V2 glycan site. Trispecific Abs exhibited higher potency and breadth than any previously described single bnAb, showed pharmacokinetics similar to those of human bnAbs, and conferred complete immunity against a mixture of simian-human immunodeficiency viruses (SHIVs) in nonhuman primates, in contrast to single bnAbs. Trispecific Abs thus constitute a platform to engage multiple therapeutic targets through a single protein, and they may be applicable for treatment of diverse diseases, including infections, cancer, and autoimmunity.


  • Organizational Affiliation

    Sanofi, 640 Memorial Drive, Cambridge, MA 02139, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Anti-HIV CODV-Fab Light chainA [auth L]338Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Anti-HIV CODV-Fab Heavy chainB [auth H]396Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.55 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.226α = 90
b = 151.226β = 90
c = 200.595γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-11
    Type: Initial release
  • Version 1.1: 2017-10-18
    Changes: Database references
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Refinement description