5VPG

CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.156

Literature

Macromolecules
Sequence Display for 5VPG

Classification: HYDROLASE / IMMUNE SYSTEM

Total Structure Weight: 77258.44

Macromolecule Entities
Molecule Chains Length Organism Details
Der p 1 allergen A 222 Dermatophagoides pteronyssinus Fragment: UNP RESIDUES 99-320
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAB 4C1 - LIGHT CHAIN C 212 Mus musculus
FAB 4C1 - HEAVY CHAIN D 255 Mus musculus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.156
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.80 α = 90.00
b = 61.76 β = 90.00
c = 223.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-05
  • Released Date: 2017-05-24
  • Deposition author(s): Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.
  • This entry supercedes:

Revision History

  • Version 1_0: 2017-05-24

    Type: Initial release