5VP5

Crystal structure of a 3-oxoacyl-acyl-carrier protein reductase FabG4 from Mycobacterium smegmatis bound to NAD

• PDB DOI: https://doi.org/10.2210/pdb5VP5/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Mycolicibacterium smegmatis MC2 155
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-05-04 Released: 2017-05-17 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.177 
• R-Value Work: 0.136 
• R-Value Observed: 0.138 

Literature

Crystal structure of a 3-oxoacyl-acyl-carrier protein reductase FabG4 from Mycobacterium smegmatis bound to NAD

Edwards, T.E., Mayclin, S.J., Lorimer, D.D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 49.67 kDa 
• Atom Count: 3,503 
• Modelled Residue Count: 411 
• Deposited Residue Count: 472 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-acyl-carrier protein reductase FabG4	A	472	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0  Gene Names: fabG4, MSMEG_0372, MSMEI_0365 EC: 1.1.1.100
UniProt
Find proteins for A0QPE7 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QPE7  Go to UniProtKB:  A0QPE7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	B [auth A]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
CL	C [auth A], D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.177 
• R-Value Work: 0.136 
• R-Value Observed: 0.138 
• Space Group: C 1 2 1
• Diffraction Data: https://doi.org/10.18430/M35VP5

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 101.58	α = 90
b = 60.61	β = 126.69
c = 76.27	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-05-17 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2017-05-17
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description