5UGD

Protease Inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 5UGD

Classification: HYDROLASE / INHIBITOR

Total Structure Weight: 28063.34

Macromolecule Entities
Molecule Chains Length Organism Details
Plasminogen A 251 Homo sapiens EC#: 3.4.21.7 IUBMB
Fragment: UNP residues 562-810
Details: Serine protease domain of plasmin
Gene Name(s): PLG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
89S
Query on 89S

A Nalpha-[trans-4-(aminomethyl)cyclohexane- 1-carbonyl]-N-octyl-O-[(pyridin-4-yl)methyl]- L-tyrosinamide
C31 H46 N4 O3
ZBCXDUNUUKRQSV-RWPDHJIBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.38 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.160
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 49.52 α = 90.00
b = 39.49 β = 111.91
c = 62.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-08
  • Released Date: 2017-05-31
  • Deposition author(s): Law, R.H.P., Wu, G., Whisstock, J.C.

Revision History

  • Version 1_0: 2017-05-31

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Author supporting evidence