5TPP

Crystal Structure of DH270.5 (unliganded) from the DH270 Broadly Neutralizing N332-glycan Dependent Lineage


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 5TPP

Classification: IMMUNE SYSTEM

Total Structure Weight: 48868.27

Macromolecule Entities
Molecule Chains Length Organism Details
DH270.5 Fab heavy chain L 216 Homo sapiens
DH270.5 Fab light chain H 238 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

H CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

L SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.179
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 135.11 α = 90.00
b = 68.80 β = 113.21
c = 59.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-20
  • Released Date: 2017-03-15
  • Deposition author(s): Fera, D., Harrison, S.C.

Revision History

  • 2017-03-29
    Type: Database references
  • 2017-09-13
    Type: Author supporting evidence, Refinement description