Slow-and fast-binding inhibitors of thermolysin display different modes of binding. crystallographic analysis of extended phosphonamidate transition-state analogues DOI:10.2210/pdb5tmn/pdb

5TMN   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Hydrolase/hydrolase Inhibitor Structure Weight: 35059.79 Molecule: THERMOLYSIN Polymer: 1 Type: protein Length: 316 Chains: E EC#: 3.4.24.27    Organism Bacillus thermoproteolyticus Gene Name npr UniProtKB:   Protein Feature View | Search PDB | P00800         Source Hide Polymer: 1 Scientific Name: Bacillus thermoproteolyticus   Taxonomy         Related PDB Entries Hide Identifier Details 4TMN  unspecified      Biologically Interesting Molecules (BIRD) Hide Identifier Image Name Type Class Chain ID   PRD_000654 Search  CBZ-GLY-P-LEU-LEU (ZGPLL) Peptide-like Enzyme Inhibitor E   Ligand Explorer     Ligand Chemical Component Hide Identifier Formula Name Interactions 0PJ Search  Download  C21 H34 N3 O7 P N-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]- L-leucyl-L-leucine   Ligand Explorer CA Search  Download  Ca CALCIUM ION   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Domain Annotations Hide SCOP Classification v1.75: 1 Domain - data from SCOP   CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 2 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Holden, H.M.,  Tronrud, D.E.,  Monzingo, A.F.,  Weaver, L.H.,  Matthews, B.W. Deposition:   1987-06-29 Release:   1989-01-09 Last Modified (REVDAT):   2012-06-13     Revision History    Hide Mouse over text for details 2012-12-12 Other 2012-06-13 Biological assembly 2011-07-13 Atom nomenclature 2011-07-13 Binding sites and description 2011-07-13 Non-polymer description 2011-07-13 Function and keywords 2011-07-13 Flag nonstandard coordinate frame 2011-07-13 Linkage 2011-07-13 Sequence database correspondence 2011-07-13 Polymer description 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.60 R-Value: 0.177 (obs.) R-Free: n/a Space Group: P 61 2 2 Unit Cell:   Length [Å] Angles [°] a = 94.10 α = 90.00  b = 94.10 β = 90.00  c = 131.40 γ = 120.00