5TDP

Crystal structure of the Fab fragment of anti-HER2 antibody 4D5 with redesigned heavy and light chain interfaces


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 5TDP

Classification: IMMUNE SYSTEM

Total Structure Weight: 94317.36

Macromolecule Entities
Molecule Chains Length Organism Details
anti-HER2 Fab Light Chain A, C 214 Homo sapiens
anti-HER2 Fab Heavy Chain B, D 223 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 39.04 α = 113.78
b = 79.75 β = 93.07
c = 85.74 γ = 102.41

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-09-19
  • Released Date: 2016-12-07
  • Deposition author(s): Yin, Y., Carter, P.J.

Revision History

  • Version 1_0: 2016-12-07

    Type: Initial release