5NUZ

Junin virus GP1 glycoprotein in complex with an antibody Fab fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 5NUZ

Classification: IMMUNE SYSTEM

Total Structure Weight: 139722.36

Macromolecule Entities
Molecule Chains Length Organism Details
eOD01 heavy chain A, H 231 Mus musculus Fragment: Fab fragment (domains: variable heavy and constant heavy 1)
Details: Fab fragment (domains: variable heavy and constant heavy 1)
eOD01 light chain B, L 221 Mus musculus Fragment: Fab fragment (domains: variable light and constant light)
Details: Fab fragment (domains: variable light and constant light)
Pre-glycoprotein polyprotein GP complex C, D 156 Junin mammarenavirus Fragment: receptor attachment glycoprotein GP1
Details: Fragment: receptor attachment glycoprotein GP1, residues 87-232
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

C, D ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

C, D BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, H, L ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.184
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 97.09 α = 90.00
b = 101.91 β = 90.00
c = 147.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-03
  • Released Date: 2017-06-28
  • Deposition author(s): Zeltina, A., Krumm, S.A., Sahin, M., Struwe, W.B., Harlos, K., Nunberg, J.H., Crispin, M., Pinschewer, D.D., Doores, K.J., Bowden, T.A.

Revision History

  • Version 1_0: 2017-06-28

    Type: Initial release

  • Version 1_1: 2017-07-12

    Type: Database references