5LJN

Structure of the HOIP PUB domain bound to SPATA2 PIM peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 5LJN

Classification: LIGASE

Total Structure Weight: 41528.25

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin-protein ligase RNF31 A, B 173 Homo sapiens EC#: 6.3.2 IUBMB
Gene Name(s): RNF31 Gene View ZIBRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Spermatogenesis-associated protein 2 C, D 8 Homo sapiens Fragment: UNP residues 334-341
Gene Name(s): SPATA2 Gene View KIAA0757 PD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.233
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 89.04 α = 90.00
b = 89.04 β = 90.00
c = 53.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-18
  • Released Date: 2016-08-24
  • Deposition author(s): Elliott, P.R., Komander, D.

Revision History

  • Version 1_0: 2016-08-24

    Type: Initial release

  • Version 1_1: 2016-09-14

    Type: Database references

  • Version 1_2: 2016-09-28

    Type: Database references