5LGH

Afamin antibody fragment, N14 Fab, L1- glycosilated, crystal form II, same as 5L7X, but isomorphous setting indexed same as 5L88, 5L9D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 5LGH

Classification: IMMUNE SYSTEM

Total Structure Weight: 48316.66

Macromolecule Entities
Molecule Chains Length Organism Details
MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA HEAVY CHAIN H 220 Mus musculus Details: IGG1-KAPPA HEAVY CHAIN, 1-214
MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN L 215 Mus musculus Details: IGG1-KAPPA LIGHT CHAIN, 1-214

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PE
Query on 1PE

L PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

H TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

H DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.20 α = 90.00
b = 67.49 β = 90.00
c = 88.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-07
  • Released Date: 2016-08-03
  • Deposition author(s): Rupp, B., Naschberger, A.

Revision History

  • Version 1_0: 2016-08-03

    Type: Initial release

  • Version 1_1: 2016-12-07

    Type: Database references

  • Version 1_2: 2016-12-21

    Type: Database references