5KN5

TGFalpha/Epiregulin complex with neutralizing antibody LY3016859


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5KN5

Classification: IMMUNE SYSTEM

Total Structure Weight: 103360.96

Macromolecule Entities
Molecule Chains Length Organism Details
Epiregulin Antibody LY3016859 Fab Heavy Chain A, D 217 Homo sapiens
Epiregulin Antibody LY3016859 Fab Light Chain B, E 216 Homo sapiens
Protransforming growth factor alpha C, F 40 Homo sapiens Gene Name(s): TGFA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.206
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.25 α = 90.00
b = 164.35 β = 104.21
c = 64.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-27
  • Released Date: 2016-08-31
  • Deposition author(s): Atwell, S., Boyles, J.S., Clawson, D.K., Druzina, Z., Josef, G.H., Weichert, K., Witcher, D.R.

Revision History

  • Version 1_0: 2016-08-31

    Type: Initial release

  • Version 1_1: 2016-11-02

    Type: Database references