5K9K

Crystal structure of multidonor HV6-1-class broadly neutralizing Influenza A antibody 56.a.09 in complex with Hemagglutinin Hong Kong 1968.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 5K9K

Classification: IMMUNE SYSTEM

Total Structure Weight: 218535.97

Macromolecule Entities
Molecule Chains Length Organism Details
56.a.09 Heavy chain A, H 229 Homo sapiens
56.a.09 Light chain B, L 215 Homo sapiens
Hemagglutinin F, I 503 Influenza a virus Mutation: G218E
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

F, I N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

F, I ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

F, I BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.225
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 123.90 α = 90.00
b = 136.56 β = 90.00
c = 311.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-31
  • Released Date: 2016-12-21
  • Deposition author(s): Joyce, M.G., Thomas, P.V., Wheatley, A.K., McDermott, A.B., Mascola, J.R., Kwong, P.D.

Revision History

  • Version 1_0: 2016-12-21

    Type: Initial release