5K4C

Structure of eukaryotic translation initiation factor 3 subunit D (eIF3d) cap binding domain from Nasonia vitripennis, Crystal form 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 5K4C

Classification: TRANSLATION

Total Structure Weight: 42479.84

Macromolecule Entities
Molecule Chains Length Organism Details
Eukaryotic translation initiation factor 3 subunit D A 368 Nasonia vitripennis Fragment: unp residues 172-537
Gene Name(s): LOC100122367
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.162
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.01 α = 90.00
b = 61.84 β = 90.00
c = 138.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-20
  • Released Date: 2016-07-27
  • Deposition author(s): Kranzusch, P.J., Lee, A.S.Y., Doudna, J.A., Cate, J.H.D.

Revision History

  • Version 1_0: 2016-07-27

    Type: Initial release

  • Version 1_1: 2016-08-10

    Type: Database references

  • Version 1_2: 2016-08-17

    Type: Database references

  • Version 1_3: 2017-09-20

    Type: Author supporting evidence, Database references, Derived calculations