5K4B

Structure of eukaryotic translation initiation factor 3 subunit D (eIF3d) cap binding domain from Nasonia vitripennis, Crystal form 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 5K4B

Classification: TRANSLATION

Total Structure Weight: 84513.47

Macromolecule Entities
Molecule Chains Length Organism Details
Eukaryotic translation initiation factor 3 subunit D A, B 368 Nasonia vitripennis Fragment: unp residues 172-537
Gene Name(s): LOC100122367
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.175
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 61.83 α = 90.00
b = 62.91 β = 90.00
c = 192.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-20
  • Released Date: 2016-07-27
  • Deposition author(s): Kranzusch, P.J., Lee, A.S.Y., Doudna, J.A., Cate, J.H.D.

Revision History

  • 2016-08-10
    Type: Database references
  • 2016-08-17
    Type: Database references
  • 2017-09-20
    Type: Author supporting evidence, Database references, Derived calculations