5JXA

Crystal structure of ligand-free VRC03 antigen-binding fragment.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 5JXA

Classification: IMMUNE SYSTEM

Total Structure Weight: 49259.15

Macromolecule Entities
Molecule Chains Length Organism Details
VRC03 Heavy chain H 235 Homo sapiens
VRC03 Light chain L 209 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

H, L PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

H, L COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

H, L 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.160
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 162.18 α = 90.00
b = 50.80 β = 108.15
c = 71.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-12
  • Released Date: 2016-07-27
  • Deposition author(s): Zhou, T., Moquin, S., Joyce, M.G., Mascola, J.R., Kwong, P.D.

Revision History

  • 2016-08-17
    Type: Database references