5JOP

Crystal structure of anti-glycan antibody Fab14.22 in complex with Streptococcus pneumoniae serotype 14 tetrasaccharide at 1.75 A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 5JOP

Classification: IMMUNE SYSTEM

Total Structure Weight: 105995.30

Macromolecule Entities
Molecule Chains Length Organism Details
Fab 14.22 light chain D, L 219 Mus musculus
Fab14.22 heavy chain E, H 249 Mus musculus

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

D, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

D, L BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

D, L BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

D, E, H, L PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

D, E, H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.165
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 125.27 α = 90.00
b = 74.74 β = 100.55
c = 120.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-02
  • Released Date: 2017-03-22
  • Deposition author(s): Sarkar, A., Irimia, A., Teyton, L., Wilson, I.A.

Revision History

  • Version 1_0: 2017-03-22

    Type: Initial release

  • Version 1_1: 2017-04-12

    Type: Database references