5IGX

Crystal structure of NIH45-46 Fab germline precursor in complex with 426c.TM1deltaV1-3 gp120


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.39 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.280

Literature

Macromolecules
Sequence Display for 5IGX

Classification: IMMUNE SYSTEM

Total Structure Weight: 89431.17

Macromolecule Entities
Molecule Chains Length Organism Details
426c.TM1deltaV1-3 gp120 G 353 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
germline NIH45-46 Fab heavy chain H 236 Homo sapiens
germline NIH45-46 light chain L 210 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

G BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.39 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.280
  • Space Group: F 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 146.28 α = 90.00
b = 168.53 β = 90.00
c = 176.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-28
  • Released Date: 2016-04-06
  • Deposition author(s): Scharf, L., Bjorkman, P.J.

Revision History

  • Version 1_0: 2016-04-06

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Advisory, Author supporting evidence, Derived calculations