5IFA

Crystal structure of unbound VRC01c-HuGL2 Fab from an HIV-1 naive donor at 1.82 A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 5IFA

Classification: IMMUNE SYSTEM

Total Structure Weight: 49316.88

Macromolecule Entities
Molecule Chains Length Organism Details
VRC01c-HuGL2 Fab heavy chain H 221 Homo sapiens
VRC01c-HuGL2 Fab light chain L 216 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PE
Query on 1PE

H PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.205
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 79.06 α = 90.00
b = 124.20 β = 90.00
c = 47.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-25
  • Released Date: 2016-04-06
  • Deposition author(s): Sarkar, A., Wilson, I.A.

Revision History

  • Version 1_0: 2016-04-06

    Type: Initial release