5IF0

Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.44 A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 5IF0

Classification: IMMUNE SYSTEM / VIRAL PROTEIN

Total Structure Weight: 135620.27

Macromolecule Entities
Molecule Chains Length Organism Details
VRC01cHuGL2 Fab heavy chain A, H 221 Homo sapiens
VRC01c-HuGL2 Fab light chain B, L 216 Homo sapiens
Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8 G, I 183 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G, I N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

L PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.191
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 174.19 α = 90.00
b = 147.58 β = 126.61
c = 103.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-25
  • Released Date: 2016-04-06
  • Deposition author(s): Sarkar, A., Wilson, I.A.

Revision History

  • Version 1_0: 2016-04-06

    Type: Initial release