5I9J

Structure of the cholesterol and lutein-binding domain of human STARD3 at 1.74A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 5I9J

Classification: TRANSPORT PROTEIN

Total Structure Weight: 26420.79

Macromolecule Entities
Molecule Chains Length Organism Details
StAR-related lipid transfer protein 3 A 229 Homo sapiens Fragment: lutein-binding domain (UNP residues 216-444)
Gene Name(s): STARD3 Gene View CAB1 MLN64
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TLA
Query on TLA

A L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.169
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 83.39 α = 90.00
b = 83.39 β = 90.00
c = 82.19 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-20
  • Released Date: 2016-03-16
  • Deposition author(s): Horvath, M.P., Bernstein, P.S., Li, B., George, E.W., Tran, Q.T.

Revision History

  • Version 1_0: 2016-03-16

    Type: Initial release

  • Version 1_1: 2016-08-17

    Type: Database references

  • Version 1_2: 2017-09-27

    Type: Author supporting evidence, Derived calculations, Refinement description