5I8O

HMM5 Fab in complex with disaccharide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 5I8O

Classification: IMMUNE SYSTEM

Total Structure Weight: 46642.82

Macromolecule Entities
Molecule Chains Length Organism Details
HMM5 antibody heavy chain H 219 Homo sapiens
HMM5 antibody light chain L 217 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2F8
Query on 2F8

H methyl 2-(acetylamino)-2-deoxy-alpha-D-glucopyranoside
C9 H17 N O6
ZEVOCXOZYFLVKN-OKNNCHMLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

H ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.164
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.45 α = 90.00
b = 63.59 β = 90.00
c = 108.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-19
  • Released Date: 2016-03-23
  • Deposition author(s): Andersen, G.R., Tjerrild, L.M., Spillner, E.

Revision History

  • Version 1_0: 2016-03-23

    Type: Initial release