5I4F

scFv 2D10 complexed with alpha 1,6 mannobiose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 5I4F

Classification: IMMUNE SYSTEM

Total Structure Weight: 27579.56

Macromolecule Entities
Molecule Chains Length Organism Details
scFv 2D10 A 251 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6DM
Query on 6DM

A 6-O-alpha-D-mannopyranosyl-alpha-D-mannopyranose
alpha 1,6 mannobiose (Synonym)
C12 H22 O11
DLRVVLDZNNYCBX-ONPLHCRPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.167
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 81.09 α = 90.00
b = 81.09 β = 90.00
c = 74.39 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-12
  • Released Date: 2016-12-21
  • Deposition author(s): Vashisht, S., Kumar, A., Kaur, K.J., Salunke, D.M.

Revision History

No revisions since initial release