5I16

CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV1-69/IGKV3-11


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 5I16

Classification: IMMUNE SYSTEM

Total Structure Weight: 95852.76

Macromolecule Entities
Molecule Chains Length Organism Details
FAB LIGHT CHAIN A, L 214 Homo sapiens
FAB HEAVY CHAIN B, H 228 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A, B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
B, H L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.192
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 212.01 α = 90.00
b = 55.05 β = 97.88
c = 80.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-05
  • Released Date: 2016-06-08
  • Deposition author(s): Teplyakov, A., Obmolova, G., Malia, T., Luo, J., Gilliland, G.

Revision History

  • Version 1_0: 2016-06-08

    Type: Initial release

  • Version 1_1: 2016-06-29

    Type: Database references

  • Version 1_2: 2016-08-03

    Type: Database references