5GJS

Crystal structure of H1 hemagglutinin from A/California/04/2009 in complex with a neutralizing antibody 3E1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.251

Literature

Macromolecules
Sequence Display for 5GJS

Classification: IMMUNE SYSTEM

Total Structure Weight: 105177.71

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin A 329 Influenza a virus Fragment: UNP residues 18-344
Mutation: G212C, R227C
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemagglutinin B 182 Influenza a virus Fragment: neutralizing antibody 3E1
Gene Name(s): HA
light chain of human neutralizing antibody 3E1 L 214 Homo sapiens
heavy chain of human neutralizing antibody 3E1 H 222 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.251
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 130.16 α = 90.00
b = 130.16 β = 90.00
c = 365.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-01
  • Released Date: 2016-12-07
  • Deposition author(s): Wang, W., Zhang, T., Ding, J.

Revision History

  • Version 1_0: 2016-12-07

    Type: Initial release

  • Version 1_1: 2016-12-21

    Type: Database references