5FJ9

Cryo-EM structure of yeast apo RNA polymerase III at 4.6 A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.6 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5FJ9

Classification: TRANSCRIPTION

Total Structure Weight: 677098.69

Macromolecule Entities
Molecule Chains Length Organism Details
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 A 1460 Saccharomyces cerevisiae EC#: 2.7.7.6 IUBMB
Gene Name(s): RPO31 RPC1 RPC160 YOR116C O3254 YOR3254C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2 B 1149 Saccharomyces cerevisiae EC#: 2.7.7.6 IUBMB
Gene Name(s): RET1 RPC128 RPC2 YOR207C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1 C 335 Saccharomyces cerevisiae Gene Name(s): RPC40 RPC5 YPR110C P8283.18
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9 D 161 Saccharomyces cerevisiae Gene Name(s): RPC17 YJL011C J1349
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 E 215 Saccharomyces cerevisiae Gene Name(s): RPB5 RPA7 RPC9 YBR154C YBR1204
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 F 155 Saccharomyces cerevisiae EC#: 4.2.1.99 IUBMB
Gene Name(s): RPO26 RPB6 YPR187W P9677.8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8 G 212 Saccharomyces cerevisiae Gene Name(s): RPC25 YKL144C UNF1 YKL1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 H 146 Saccharomyces cerevisiae Gene Name(s): RPB8 YOR224C YOR50-14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10 I 110 Saccharomyces cerevisiae Gene Name(s): RPC11 YDR045C YD9609.01C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 J 70 Saccharomyces cerevisiae Gene Name(s): RPB10 YOR210W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2 K 142 Saccharomyces cerevisiae Gene Name(s): RPC19 YNL113W N1937
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 L 70 Saccharomyces cerevisiae Gene Name(s): RPC10 RPB12 YHR143W-A YHR143BW
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC5 M 282 Saccharomyces cerevisiae Gene Name(s): RPC37 YKR025W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4 N 422 Saccharomyces cerevisiae Gene Name(s): RPC53 RPC4 YDL150W D1557
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3 O 654 Saccharomyces cerevisiae Gene Name(s): RPC82 RPC3 YPR190C P9677.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6 P 317 Saccharomyces cerevisiae Gene Name(s): RPC34 YNR003C N2031
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC7 Q 104 Saccharomyces cerevisiae Gene Name(s): RPC31 ACP2 Gene View RPC8 YNL151C N1769
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, I, J, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
Q L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.6 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-06
  • Released Date: 2015-11-25
  • Deposition author(s): Hoffmann, N.A., Jakobi, A.J., Moreno-Morcillo, M., Glatt, S., Kosinski, J., Hagen, W.J., Sachse, C., Muller, C.W.

Revision History

  • Version 1_0: 2015-11-25

    Type: Initial release

  • Version 1_1: 2015-12-09

    Type: Database references

  • Version 1_2: 2016-01-13

    Type: Database references

  • Version 1_3: 2017-08-02

    Type: Data collection