5FER

Complex of TRIM25 RING with UbcH5-Ub


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 5FER

Classification: LIGASE

Total Structure Weight: 69827.36

Macromolecule Entities
Molecule Chains Length Organism Details
E3 ubiquitin/ISG15 ligase TRIM25 A, D 85 Homo sapiens EC#: 6.3.2.n3 IUBMB
Gene Name(s): TRIM25 Gene View EFP RNF147 ZNF147
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-conjugating enzyme E2 D1 B, E 150 Homo sapiens EC#: 2.3.2.23 IUBMB
Mutation: S22R, C85K
Gene Name(s): UBE2D1 Gene View SFT UBC5A UBCH5 UBCH5A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ubiquitin-40S ribosomal protein S27a C, F 76 Bos taurus Gene Name(s): RPS27A Gene View UBA80 UBCEP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.34 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.227
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 60.48 α = 90.00
b = 71.70 β = 90.00
c = 160.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-17
  • Released Date: 2016-05-18
  • Deposition author(s): Rittinger, K., Koliopoulos, M.G., Esposito, D.

Revision History

  • Version 1_0: 2016-05-18

    Type: Initial release

  • Version 1_1: 2016-06-15

    Type: Database references

  • Version 1_2: 2017-09-13

    Type: Author supporting evidence