5FCU

CRYSTAL STRUCTURE OF THE INNER DOMAIN OF CLADE A/E HIV-1 GP120 IN COMPLEX WITH THE ADCC-POTENT RHESUS MACAQUE ANTIBODY JR4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 5FCU

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 66985.01

Macromolecule Entities
Molecule Chains Length Organism Details
clade A/E 93TH057 HIV-1 gp120 core G 169 Human immunodeficiency virus 1 Fragment: UNP residues 1-140
Gene Name(s): HIV-1 Env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
JR4 FAB HEAVY CHAIN H 233 Macaca mulatta
JR4 FAB LIGHT CHAIN L 216 Macaca mulatta

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

L CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.184
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 78.45 α = 90.00
b = 89.85 β = 90.00
c = 180.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-15
  • Released Date: 2016-03-16
  • Deposition author(s): Gohain, N., Tolbert, W.D., Pazgier, M.

Revision History

  • 2016-06-22
    Type: Data collection, Database references
  • 2017-09-13
    Type: Author supporting evidence