5FBE

COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 5FBE

Classification: HYDROLASE

Total Structure Weight: 25296.64

Macromolecule Entities
Molecule Chains Length Organism Details
Complement factor D A 232 Homo sapiens EC#: 3.4.21.46 IUBMB
Fragment: UNP residues 26-253
Gene Name(s): CFD Gene View DF PFD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5W5
Query on 5W5

A methyl 2-[[[(2~{S})-2-[[3-(trifluoromethyloxy)phenyl]carbamoyl]pyrrolidin- 1-yl]carbonylamino]methyl]benzoate
C22 H22 F3 N3 O5
PFCVWXAGCYCOIQ-SFHVURJKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.169
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 55.40 α = 90.00
b = 50.00 β = 105.75
c = 39.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-14
  • Released Date: 2016-10-26
  • Deposition author(s): Ostermann, N., Zink, F.

Revision History

  • Version 1_0: 2016-10-26

    Type: Initial release

  • Version 1_1: 2016-11-02

    Type: Database references

  • Version 1_2: 2016-11-23

    Type: Database references