5F9J

Structure of HLA-A2:01 with peptide Y9L


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 5F9J

Classification: IMMUNE SYSTEM

Total Structure Weight: 44578.46

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class I histocompatibility antigen, A-2 alpha chain A 274 Homo sapiens Gene Name(s): HLA-A Gene View HLAA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 98 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide Y9L C 9 Toxoplasma gondii

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.199
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 53.95 α = 90.00
b = 80.63 β = 114.21
c = 57.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-09
  • Released Date: 2016-12-21
  • Deposition author(s): Remesh, S.G., Zajonc, D.M.

Revision History

  • Version 1_0: 2016-12-21

    Type: Initial release