5EUT

Crystal structure of phosphatidyl inositol 4-kinase II alpha in the apo state

PDB DOI: https://doi.org/10.2210/pdb5EUT/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens, Tequatrovirus T4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-11-19 Released: 2015-12-23
Deposition Author(s): Baumlova, A., Boura, E.
Funding Organization(s): Ministry of Education, Youth and Sports of the Czech Republic

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.289
R-Value Work: 0.246
R-Value Observed: 0.249

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of phosphatidyl inositol 4-kinase II alpha in the apo state

Baumlova, A., Boura, E.

To be published.

Macromolecule Content

Total Structure Weight: 63.24 kDa
Atom Count: 3,894
Modelled Residue Count: 485
Deposited Residue Count: 556
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphatidylinositol 4-kinase type 2-alpha,Endolysin,Phosphatidylinositol 4-kinase type 2-alpha	A	556	Homo sapiens, Tequatrovirus T4	Mutation(s): 0 Gene Names: PI4K2A EC: 2.7.1.67 (PDB Primary Data), 3.2.1.17 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BTU6 (Homo sapiens) Explore Q9BTU6 Go to UniProtKB: Q9BTU6
PHAROS: Q9BTU6 GTEx: ENSG00000155252
Find proteins for P00720 (Enterobacteria phage T4) Explore P00720 Go to UniProtKB: P00720
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P00720Q9BTU6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.289
R-Value Work: 0.246
R-Value Observed: 0.249
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.006	α = 90
b = 101.515	β = 90
c = 78.135	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2015-12-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Education, Youth and Sports of the Czech Republic	Czech Republic	LO1302

Revision History (Full details and data files)

Version 1.0: 2015-12-23
Type: Initial release
Version 1.1: 2017-09-06
Changes: Author supporting evidence

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.