5EN2

Molecular basis for antibody-mediated neutralization of New World hemorrhagic fever mammarenaviruses


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 5EN2

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 65981.95

Macromolecule Entities
Molecule Chains Length Organism Details
GD01 heavy chain A 224 Mus musculus
GD01 light chain B 212 Mus musculus
Pre-glycoprotein polyprotein GP complex C 141 Junin mammarenavirus Gene Name(s): GPC GP-C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

C ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

C BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.181
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.11 α = 90.00
b = 74.79 β = 90.00
c = 177.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-09
  • Released Date: 2015-12-30
  • Deposition author(s): Mahmutovic, S., Clark, L., Levis, S., Briggiler, A., Enria, D., Harrison, S.C., Abraham, J.

Revision History

  • 2017-09-13
    Type: Author supporting evidence, Derived calculations