5DUB

Context-independent anti-hypusine antibody FabHpu98 in complex with deoxyhypusine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 5DUB

Classification: IMMUNE SYSTEM

Total Structure Weight: 94734.55

Macromolecule Entities
Molecule Chains Length Organism Details
Fab Hpu98 Heavy chain A, H 222 Oryctolagus cuniculus
Fab Hpu98 Light chain B, L 214 Oryctolagus cuniculus
Peptide: GLY-5GG-GLY-ALA P 4 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, H, L, P SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A, H L-PEPTIDE LINKING C5 H7 N O3 GLU
5GG
Query on 5GG
P L-peptide linking C10 H23 N3 O2 Lys

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.181
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 105.67 α = 90.00
b = 293.98 β = 90.00
c = 68.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-18
  • Released Date: 2016-01-20
  • Deposition author(s): Zhai, Q., Carter, P.J.

Revision History

  • 2016-02-03
    Type: Database references
  • 2016-03-02
    Type: Database references