5DS8

Context-independent anti-hypusine antibody FabHpu98 in complex with hypusine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 5DS8

Classification: IMMUNE SYSTEM

Total Structure Weight: 93999.82

Macromolecule Entities
Molecule Chains Length Organism Details
Fab Hpu98 Heavy Chain A, H 222 Oryctolagus cuniculus
Fab Hou98 Light Chain B, L 214 Oryctolagus cuniculus
Tetrapeptide GLY-HPU-GLY-ALA P 4 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, H, L, P SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A, H L-PEPTIDE LINKING C5 H7 N O3 GLU
5CT
Query on 5CT
P peptide linking C10 H23 N3 O3 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.183
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 106.00 α = 90.00
b = 294.08 β = 90.00
c = 68.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-17
  • Released Date: 2016-01-20
  • Deposition author(s): Zhai, Q., Carter, P.J.

Revision History

  • 2016-02-03
    Type: Derived calculations
  • 2016-03-02
    Type: Database references
  • 2016-05-04
    Type: Non-polymer description