5D7J

Structure of human MR1-5-OP-RU in complex with human MAIT M33.64(Y95alphaF) TCR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 5D7J

Classification: IMMUNE SYSTEM

Total Structure Weight: 188110.11

Macromolecule Entities
Molecule Chains Length Organism Details
M33.64 TCR Alpha Chain A, G 204 Homo sapiens
M33.64 TCR Beta Chain B, H 245 Homo sapiens
Major histocompatibility complex class I-related gene protein C, E 271 Homo sapiens Mutation: C261S
Gene Name(s): MR1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin D, F 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2LJ
Query on 2LJ

C, E 1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]- 1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D- ribitol
5-(2-oxopropylideneamino)-6-D-ribitylaminouracil (Synonym)
C12 H18 N4 O7
LXKLTDXEFFOBPT-CEKOQDAHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B, D, H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.179
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 214.60 α = 90.00
b = 69.59 β = 103.81
c = 141.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-14
  • Released Date: 2016-01-27
  • Deposition author(s): Keller, A.N., Woolley, R.E., Rossjohn, J.

Revision History

  • Version 1_0: 2016-01-27

    Type: Initial release

  • Version 1_1: 2016-02-03

    Type: Database references

  • Version 1_2: 2016-02-10

    Type: Derived calculations, Refinement description