5D6C

Structure of 4497 Fab bound to synthetic wall teichoic acid fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 5D6C

Classification: IMMUNE SYSTEM

Total Structure Weight: 97766.68

Macromolecule Entities
Molecule Chains Length Organism Details
4497 antibody IgK (VL and CL) A, L 220 Homo sapiens
4497 antibody IgG1 (VH and CH1) B, H 224 Homo sapiens

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
57S
Query on 57S

B, L 4-O-[2-(acetylamino)-2-deoxy-beta-D-glucopyranosyl]- 5-O-phosphono-D-ribitol
C13 H26 N O13 P
VRKCYAMLHZHZPR-BXGOZMQFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

H, L ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, H, L CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.203
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.71 α = 90.00
b = 111.47 β = 90.00
c = 158.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-12
  • Released Date: 2015-11-11
  • Deposition author(s): Lupardus, P.J., Fong, R.

Revision History

  • 2015-12-02
    Type: Database references