5CZV

Crystal structure of Notch3 NRR in complex with 20350 Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 5CZV

Classification: IMMUNE SYSTEM

Total Structure Weight: 77789.92

Macromolecule Entities
Molecule Chains Length Organism Details
Neurogenic locus notch homolog protein 3 A 271 Homo sapiens Fragment: negative regulatory region (UNP residues 1378-1640)
Gene Name(s): NOTCH3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab 20350 heavy chain H 223 Homo sapiens
Fab 20350 light chain L 214 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.204
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 91.92 α = 90.00
b = 104.35 β = 113.17
c = 92.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-01
  • Released Date: 2016-06-01
  • Deposition author(s): Hu, T., Fryer, C., Chopra, R., Clark, K.

Revision History

  • Version 1_0: 2016-06-01

    Type: Initial release

  • Version 1_1: 2016-12-07

    Type: Database references