5CQG

Structure of Tribolium telomerase in complex with the highly specific inhibitor BIBR1532


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.237 

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This is version 1.4 of the entry. See complete history


Literature

Structural Basis of Telomerase Inhibition by the Highly Specific BIBR1532.

Bryan, C.Rice, C.Hoffman, H.Harkisheimer, M.Sweeney, M.Skordalakes, E.

(2015) Structure 23: 1934-1942

  • DOI: https://doi.org/10.1016/j.str.2015.08.006
  • Primary Citation of Related Structures:  
    5CQG

  • PubMed Abstract: 

    BIBR1532 is a highly specific telomerase inhibitor, although the molecular basis for inhibition is unknown. Here we present the crystal structure of BIBR1532 bound to Tribolium castaneum catalytic subunit of telomerase (tcTERT). BIBR1532 binds to a conserved hydrophobic pocket (FVYL motif) on the outer surface of the thumb domain. The FVYL motif is near TRBD residues that bind the activation domain (CR4/5) of hTER. RNA binding assays show that the human TERT (hTERT) thumb domain binds the P6.1 stem loop of CR4/5 in vitro. hTERT mutations of the FVYL pocket alter wild-type CR4/5 binding and cause telomere attrition in cells. Furthermore, the hTERT FVYL mutations V1025F, N1028H, and V1090M are implicated in dyskeratosis congenita and aplastic anemia, further supporting the biological and clinical relevance of this novel motif. We propose that CR4/5 contacts with the telomerase thumb domain contribute to telomerase ribonucleoprotein assembly and promote enzymatic activity.


  • Organizational Affiliation

    The Wistar Institute, 3601 Spruce Street, Philadelphia, PA 19104, USA; Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, PA 19104, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Telomerase reverse transcriptase
A, B
596Tribolium castaneumMutation(s): 0 
Gene Names: TERTTcasGA2_TC010963
UniProt
Find proteins for Q0QHL8 (Tribolium castaneum)
Explore Q0QHL8 
Go to UniProtKB:  Q0QHL8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0QHL8
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
55C
Query on 55C

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
2-{[(2E)-3-(naphthalen-2-yl)but-2-enoyl]amino}benzoic acid
C21 H17 N O3
PGFQXGLPJUCTOI-WYMLVPIESA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.235 
  • R-Value Observed: 0.237 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 117.719α = 90
b = 84.902β = 116.2
c = 123.333γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM088332

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-09
    Type: Initial release
  • Version 1.1: 2017-09-13
    Changes: Author supporting evidence, Derived calculations
  • Version 1.2: 2018-10-10
    Changes: Data collection, Database references, Structure summary
  • Version 1.3: 2019-12-25
    Changes: Author supporting evidence, Structure summary
  • Version 1.4: 2023-09-27
    Changes: Data collection, Database references, Refinement description