5CIN

Crystal Structure of non-neutralizing version of 4E10 (DeltaLoop) with epitope bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.148

Literature

Macromolecules
Sequence Display for 5CIN

Classification: IMMUNE SYSTEM

Total Structure Weight: 49032.17

Macromolecule Entities
Molecule Chains Length Organism Details
FAB 4E10 HEAVY CHAIN H 224 Homo sapiens
FAB 4E10 LIGHT CHAIN L 212 Homo sapiens
Peptide from MPER region of HIV-1 ENV P 16 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

L CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.148
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 157.52 α = 90.00
b = 44.66 β = 113.62
c = 85.34 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-13
  • Released Date: 2015-09-23
  • Deposition author(s): Caaveiro, J.M.M., Rujas, E., Nieva, J.L., Tsumoto, K.

Revision History

  • Version 1_0: 2015-09-23

    Type: Initial release

  • Version 1_1: 2015-11-18

    Type: Database references

  • Version 1_2: 2017-10-18

    Type: Author supporting evidence, Data collection, Database references, Derived calculations