5CIL

Crystal Structure of non-neutralizing version of 4E10 (WDWD) with epitope bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 5CIL

Classification: IMMUNE SYSTEM

Total Structure Weight: 49198.73

Macromolecule Entities
Molecule Chains Length Organism Details
FAB 4E10 HEAVY CHAIN H 226 Homo sapiens
FAB 4E10 LIGHT CHAIN L 212 Homo sapiens
Peptide from the MPER region of the ENV protein of HIV-1 P 16 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

L ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

H, L CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.163
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 157.30 α = 90.00
b = 44.89 β = 114.53
c = 86.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-13
  • Released Date: 2015-09-23
  • Deposition author(s): Caaveiro, J.M.M., Rujas, E., Nieva, J.L., Tsumoto, K.

Revision History

  • Version 1_0: 2015-09-23

    Type: Initial release

  • Version 1_1: 2015-11-18

    Type: Database references

  • Version 1_2: 2017-10-18

    Type: Author supporting evidence, Data collection, Database references, Derived calculations