5CFL

Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 5CFL

Classification: IMMUNE SYSTEM

Total Structure Weight: 44898.26

Macromolecule Entities
Molecule Chains Length Organism Details
Stimulator of Interferon Genes A, B 187 Nematostella vectensis Fragment: UNP residues 193-377
Gene Name(s): v1g246111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C2E
Query on C2E

A 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)- 3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro- 2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine- 2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin- 6-one)
c-di-GMP, Cyclic diguanosine monophosphate (Synonym)
C20 H24 N10 O14 P2
PKFDLKSEZWEFGL-MHARETSRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FLC
Query on FLC

A, B CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.172
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 81.11 α = 90.00
b = 81.11 β = 90.00
c = 97.07 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-08
  • Released Date: 2015-08-26
  • Deposition author(s): Kranzusch, P.J., Wilson, S.C., Lee, A.S.Y., Berger, J.M., Doudna, J.A., Vance, R.E.

Revision History

  • 2015-09-09
    Type: Database references
  • 2015-09-30
    Type: Database references