5C6W

anti-CXCL13 scFv - E10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 5C6W

Classification: IMMUNE SYSTEM

Total Structure Weight: 57687.16

Macromolecule Entities
Molecule Chains Length Organism Details
Protein IGHV1-69-2,Ig lambda chain V-II region NIG-84 H, J 264 Homo sapiens Mutation: G1012A, T1026S, G1031A, F1034W, Y1051F, S1055N, I1060V, N1062H, S1091A, ΔF93, T1093A, T1095L, N1096L, S1097D, R1098T, A1099Y, G1103T, L1107V, S1108T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

H, J DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

H, J SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

H, J 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

H, J CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.154
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 69.98 α = 90.00
b = 80.36 β = 90.00
c = 119.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-23
  • Released Date: 2015-11-04
  • Deposition author(s): Tu, C., Bard, J., Mosyak, L.

Revision History

No revisions since initial release