5AJB
X-ray structure of the RSL lectin in complex with Lewis X tetrasaccahride
- PDB DOI: https://doi.org/10.2210/pdb5AJB/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Ralstonia solanacearum
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2015-02-20 Released: 2016-03-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.180 
- R-Value Work: 0.146 
- R-Value Observed: 0.147 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
LECTIN | 90 | Ralstonia solanacearum | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A0S4TLR1 (Ralstonia solanacearum) Explore A0A0S4TLR1  Go to UniProtKB:  A0A0S4TLR1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0S4TLR1 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-L-fucopyranose-(1-3)-[beta-D-galactopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose | D, F, G, I | 3 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G00051MO GlyCosmos:  G00051MO GlyGen:  G00051MO |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900119 Query on PRD_900119 | D, F, G, I | Lewis X antigen, beta anomer | Oligosaccharide / Antigen |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.180 
- R-Value Work: 0.146 
- R-Value Observed: 0.147 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 43.185 | α = 90 |
b = 58.63 | β = 90 |
c = 106.713 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2016-03-02  Deposition Author(s): Topin, J., Arnaud, J., Varrot, A., Imberty, A.
Revision History (Full details and data files)
- Version 1.0: 2016-03-02
Type: Initial release - Version 1.1: 2016-03-16
Changes: Atomic model - Version 1.2: 2016-06-01
Changes: Database references - Version 1.3: 2016-07-27
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2024-01-10
Changes: Data collection, Database references, Refinement description, Structure summary