5ACP

W228R-Investigation of the impact from residues W228 and Y233 in the metallo-beta-lactamase GIM-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.202

Literature

Macromolecules
Sequence Display for 5ACP

Classification: HYDROLASE

Total Structure Weight: 55166.85

Macromolecule Entities
Molecule Chains Length Organism Details
GIM-1 PROTEIN A, B 250 Pseudomonas aeruginosa Mutation: W228R
Gene Name(s): blaGIM-1 blaGim-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
OCS
Query on OCS
A, B L-PEPTIDE LINKING C3 H7 N O5 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.202
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 38.76 α = 90.00
b = 133.62 β = 95.26
c = 40.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-17
  • Released Date: 2015-12-23
  • Deposition author(s): Skagseth, S., Carlsen, T.J., Bjerga, G.E.K., Spencer, J., Samuelsen, O., Leiros, H.-K.S.

Revision History

  • Version 1_0: 2015-12-23

    Type: Initial release

  • Version 1_1: 2016-02-10

    Type: Database references