5A7X

negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 17.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5A7X

Classification: VIRAL PROTEIN

Total Structure Weight: 467013.75

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 YU2 GP120 A, E, I 313 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
T-CELL SURFACE GLYCOPROTEIN CD4 B, F, J 181 Homo sapiens Gene Name(s): CD4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B C, G, K 214 Homo sapiens
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B D, H, L 229 Homo sapiens
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 M, O, Q 215 Homo sapiens
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 N, P, R 244 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, E, I, N, P, R N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 17.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-10
  • Released Date: 2015-08-05
  • Deposition author(s): Scharf, L., Wang, H., Gao, H., Chen, S., McDowall, A., Bjorkman, P.

Revision History

  • Version 1_0: 2015-08-05

    Type: Initial release

  • Version 1_1: 2016-08-10

    Type: Database references

  • Version 2_0: 2017-08-30

    Type: Advisory, Atomic model, Data collection