5A7E
Crystallographic Structural Determination of a Trigonal Laccase from Coriolopsis Gallica (CgL) to 1.5 A resolution
- PDB DOI: https://doi.org/10.2210/pdb5A7E/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Coriolopsis gallica
- Mutation(s): No 
- Deposited: 2015-07-03 Released: 2016-05-25 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.183 
- R-Value Work: 0.163 
- R-Value Observed: 0.164 
wwPDB Validation   3D Report Full Report
This is version 4.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
CORIOLOPSIS GALLICA LACCASE | 496 | Coriolopsis gallica | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for Q1W6B1 (Coriolopsis gallica) Explore Q1W6B1  Go to UniProtKB:  Q1W6B1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q1W6B1 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(4-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 3 | N/A | N-Glycosylation |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(3-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 5 | N/A | N-Glycosylation |
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CU Query on CU | E [auth A], F [auth A], G [auth A], H [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
ACT Query on ACT | I [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.183 
- R-Value Work: 0.163 
- R-Value Observed: 0.164 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 45.742 | α = 75.67 |
b = 56.406 | β = 73.03 |
c = 59.173 | γ = 76.49 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2016-05-25  Deposition Author(s): Ruiz-Arellano, R.R., Diaz, A., Ayala, M., De la Mora, E., Rudino-Pinera, E.
Revision History (Full details and data files)
- Version 1.0: 2016-05-25
Type: Initial release - Version 1.1: 2017-12-13
Changes: Database references, Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 3.0: 2021-04-28
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 3.1: 2022-12-07
Changes: Data collection, Database references - Version 4.0: 2023-01-18
Changes: Advisory, Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 4.1: 2024-01-31
Changes: Data collection, Refinement description