4YG0
Structural basis of glycan recognition in neonate-specific rotaviruses
- PDB DOI: https://doi.org/10.2210/pdb4YG0/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Human rotavirus A
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2015-02-25 Released: 2015-09-30 
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.28 Å
- R-Value Free: 0.199 
- R-Value Work: 0.171 
- R-Value Observed: 0.172 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Outer capsid protein VP4 | 164 | Human rotavirus A | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for B6RGK2 (Human rotavirus A) Explore B6RGK2  Go to UniProtKB:  B6RGK2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B6RGK2 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.28 Å
- R-Value Free: 0.199 
- R-Value Work: 0.171 
- R-Value Observed: 0.172 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 32.21 | α = 90 |
b = 64.05 | β = 90 |
c = 70.92 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
iMOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-09-30  Deposition Author(s): Hu, L., Prasad, B.V.V.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI36040 |
Revision History (Full details and data files)
- Version 1.0: 2015-09-30
Type: Initial release - Version 1.1: 2015-10-14
Changes: Database references - Version 1.2: 2017-09-13
Changes: Author supporting evidence, Derived calculations - Version 1.3: 2019-12-11
Changes: Author supporting evidence, Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary