4TSY

Crystal structure of FraC with lipids


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.14 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 4TSY

Classification: TOXIN

Total Structure Weight: 86377.30

Macromolecule Entities
Molecule Chains Length Organism Details
Fragaceatoxin C A, B, C, D 179 Actinia fragacea Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Adventitious Membrane Proteins: Alpha-helical Pore-forming Toxins.

Protein Name: FraC eukaryotic pore-forming toxin from sea anemone


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HXJ
Query on HXJ

A, B, C, D 2-[[(E,2S,3R)-2-(hexanoylamino)-3-oxidanyl- dec-4-enoxy]-oxidanyl-phosphoryl]oxyethyl- trimethyl-azanium
C21 H44 N2 O6 P
XVUOEYGVFVFEDQ-FGXJKGHSSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HTO
Query on HTO

A HEPTANE-1,2,3-TRIOL
C7 H16 O3
HXYCHJFUBNTKQR-RNFRBKRXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.14 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.199
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 151.34 α = 90.00
b = 199.88 β = 90.00
c = 120.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-06-19
  • Released Date: 2015-03-04
  • Deposition author(s): Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

Revision History

  • Version 1_0: 2015-03-04

    Type: Initial release

  • Version 1_1: 2016-08-03

    Type: Database references