4TS6

Crystal structure of the RIM C2A domain from Drosophila.

• PDB DOI: https://doi.org/10.2210/pdb4TS6/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Drosophila melanogaster
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-06-18 Released: 2015-07-01 
• Deposition Author(s): Hatzopoulos, G.N., Shiroma, J., Vakonakis, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 0.218 
• R-Value Work: 0.184 
• R-Value Observed: 0.186 

Literature

Crystal structure of the RIM C2A domain from Drosophila.

Paul, M., Heckmann, M., Gehring, J., Kittel, R.J., Ulzhoefer, S., Neuser, K., DiAntonio, A., Hatzopoulos, G.N., Shiroma, J., Vakonakis, I., Langenhan, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 15.04 kDa 
• Atom Count: 1,130 
• Modelled Residue Count: 126 
• Deposited Residue Count: 132 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rab3 interacting molecule variant 2	A	132	Drosophila melanogaster	Mutation(s): 0  Gene Names: Rim
UniProt
Find proteins for V5M2P5 (Drosophila melanogaster) Explore V5M2P5  Go to UniProtKB:  V5M2P5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 0.218 
• R-Value Work: 0.184 
• R-Value Observed: 0.186 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.08	α = 90
b = 38.7	β = 90
c = 131.37	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
Coot	model building
PHENIX	refinement
MrBUMP	phasing
XSCALE	data reduction
XSCALE	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-07-01 
Deposition Author(s): Hatzopoulos, G.N., Shiroma, J., Vakonakis, I.

Revision History  

• Version 1.0: 2015-07-01
  Type: Initial release
  
• Version 1.1: 2023-12-20
  Changes: Data collection, Database references, Refinement description